OBO Foundry dashboard analysis¶

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/tmp/ipykernel_4785/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    29
Turtle            28
OWL/XML Syntax     1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 57 5981.051724 20357.202976 0.0 183.25 1089.0 2717.25 124680.0
Declaration 57 1185.982759 3277.256713 0.0 90.25 414.5 877.00 22818.0
SubClassOf 55 1514.965517 4432.923973 0.0 24.50 343.0 1069.75 24611.0
ObjectPropertyRange 51 35.310345 36.554313 0.0 12.25 25.0 50.00 150.0
ObjectPropertyDomain 50 33.086207 36.330976 0.0 8.25 22.0 44.00 148.0
DataPropertyRange 46 12.810345 18.547669 0.0 1.00 5.5 19.00 97.0
SubObjectPropertyOf 44 52.068966 67.672032 0.0 1.25 26.0 70.00 284.0
DataPropertyDomain 41 12.327586 32.648789 0.0 0.00 2.0 8.00 235.0
InverseObjectProperties 41 12.327586 26.027912 0.0 0.00 2.0 11.00 126.0
DisjointClasses 40 232.137931 1610.302319 0.0 0.00 3.5 20.75 12277.0
ClassAssertion 38 126.620690 373.738525 0.0 0.00 3.0 24.75 1952.0
EquivalentClasses 35 154.362069 805.690174 0.0 0.00 5.0 65.00 6147.0
TransitiveObjectProperty 31 4.051724 6.570595 0.0 0.00 1.0 5.75 32.0
SubDataPropertyOf 29 6.637931 11.850973 0.0 0.00 0.5 9.75 63.0
SubAnnotationPropertyOf 28 12.810345 33.536812 0.0 0.00 0.0 14.00 228.0
FunctionalObjectProperty 25 2.551724 4.180877 0.0 0.00 0.0 4.00 17.0
FunctionalDataProperty 24 1.844828 4.003515 0.0 0.00 0.0 2.00 22.0
InverseFunctionalObjectProperty 22 1.724138 3.116414 0.0 0.00 0.0 1.00 12.0
IrrefexiveObjectProperty 20 3.189655 6.219542 0.0 0.00 0.0 1.00 22.0
SymmetricObjectProperty 20 3.224138 6.260551 0.0 0.00 0.0 5.75 35.0
AnnotationPropertyRangeOf 19 5.672414 18.521100 0.0 0.00 0.0 1.75 134.0
AsymmetricObjectProperty 18 2.689655 5.516186 0.0 0.00 0.0 1.00 20.0
ObjectPropertyAssertion 16 258.482759 1367.078114 0.0 0.00 0.0 2.00 10226.0
DataPropertyAssertion 14 107.568966 500.156927 0.0 0.00 0.0 0.00 3617.0
DisjointUnion 13 5.637931 17.217594 0.0 0.00 0.0 0.00 116.0
SubPropertyChainOf 10 3.120690 15.995699 0.0 0.00 0.0 0.00 120.0
AnnotationPropertyDomain 8 0.241379 0.864715 0.0 0.00 0.0 0.00 6.0
ReflexiveObjectProperty 8 0.172414 0.500454 0.0 0.00 0.0 0.00 3.0
EquivalentObjectProperties 7 1.137931 4.950450 0.0 0.00 0.0 0.00 36.0
DifferentIndividuals 6 0.327586 1.175599 0.0 0.00 0.0 0.00 6.0
DisjointObjectProperties 6 0.396552 1.588773 0.0 0.00 0.0 0.00 10.0
SameIndividual 3 0.534483 2.549272 0.0 0.00 0.0 0.00 17.0
Rule 3 0.655172 3.497125 0.0 0.00 0.0 0.00 25.0
EquivalentDataProperties 3 0.327586 1.537689 0.0 0.00 0.0 0.00 10.0
NegativeObjectPropertyAssertion 2 0.034483 0.184059 0.0 0.00 0.0 0.00 1.0
DatatypeDefinition 2 0.344828 2.495974 0.0 0.00 0.0 0.00 19.0
DisjointDataProperties 1 0.034483 0.262613 0.0 0.00 0.0 0.00 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 58 5201.120690 14136.434534 18.0 206.25 1163.0 4178.75 78469.0
ObjectUnionOf 40 14.913793 22.320854 0.0 0.00 5.0 13.75 88.0
ObjectAllValuesFrom 36 27.724138 60.072118 0.0 0.00 5.0 36.25 400.0
ObjectSomeValuesFrom 33 420.500000 2183.522715 0.0 0.00 6.5 115.00 16614.0
ObjectExactCardinality 30 9.586207 25.929753 0.0 0.00 1.0 5.00 115.0
ObjectIntersectionOf 30 137.068966 816.782087 0.0 0.00 1.0 18.50 6217.0
DataExactCardinality 23 2.551724 4.280402 0.0 0.00 0.0 3.75 18.0
DataHasValue 19 29.655172 76.514315 0.0 0.00 0.0 7.00 494.0
DataAllValuesFrom 18 1.086207 2.088267 0.0 0.00 0.0 1.75 9.0
ObjectComplementOf 16 5.000000 23.691734 0.0 0.00 0.0 1.00 179.0
ObjectHasValue 15 9.206897 32.594671 0.0 0.00 0.0 0.75 189.0
ObjectMinCardinality 15 1.482759 4.276584 0.0 0.00 0.0 0.75 28.0
DataSomeValuesFrom 13 1.362069 3.322957 0.0 0.00 0.0 0.00 17.0
ObjectOneOf 11 12.879310 54.219203 0.0 0.00 0.0 0.00 272.0
ObjectMaxCardinality 10 16.258621 117.348269 0.0 0.00 0.0 0.00 894.0
DataMaxCardinality 6 1.758621 8.425755 0.0 0.00 0.0 0.00 61.0
DataMinCardinality 4 0.293103 1.844942 0.0 0.00 0.0 0.00 14.0
ObjectHasSelf 1 0.017241 0.131306 0.0 0.00 0.0 0.00 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
17 FOAF 0.348 0.333 0.362
35 PATO 0.347 0.556 0.138
30 OBO 0.337 0.571 0.103
37 PROVO 0.312 0.504 0.121
19 IAO 0.300 0.600 0.000
22 MDO 0.285 0.571 0.000
31 OEO 0.285 0.571 0.000
49 enanomapper 0.285 0.571 0.000
0 AMONTOLOGY 0.285 0.571 0.000
10 EMMO_BattINFO 0.275 0.549 0.000
13 EMMO_crystallography 0.275 0.549 0.000
4 CHAMEO 0.275 0.549 0.000
38 QUDT 0.275 0.549 0.000
8 EMMO 0.275 0.549 0.000
11 EMMO_Datamodel 0.264 0.527 0.000
15 EMMO_mechanical_testing 0.264 0.527 0.000
1 BWMD-DOMAIN 0.252 0.504 0.000
2 BWMD-MID 0.252 0.504 0.000
14 EMMO_mappings 0.252 0.504 0.000
41 SEMMD 0.252 0.504 0.000
3 CCO 0.252 0.504 0.000
12 EMMO_atomistic 0.252 0.504 0.000
50 m4i 0.241 0.482 0.000
40 SAREF 0.241 0.482 0.000
21 MAMBO 0.234 0.467 0.000
43 SO 0.234 0.467 0.000
16 EMMO_microstructure 0.234 0.467 0.000
46 UO 0.234 0.467 0.000
32 OM 0.234 0.467 0.000
44 SP 0.234 0.467 0.000
27 NPO 0.234 0.467 0.000
6 DEB 0.234 0.467 0.000
9 EMMO_BVC 0.222 0.444 0.000
36 PMD 0.222 0.444 0.000
51 mat 0.222 0.444 0.000
5 CIF 0.222 0.444 0.000
7 DISO 0.222 0.444 0.000
25 MatOnto 0.222 0.444 0.000
18 GPO 0.222 0.444 0.000
26 MaterialsMine 0.222 0.444 0.000
29 OA 0.222 0.444 0.000
24 MSEO 0.222 0.444 0.000
28 NanoMine 0.222 0.444 0.000
53 mvc 0.222 0.444 0.000
20 LPBFO 0.219 0.438 0.000
23 MOL_TENSILE 0.208 0.416 0.000
47 WILD 0.200 0.400 0.000
34 P-Plan 0.200 0.400 0.000
56 periodictable 0.200 0.400 0.000
55 opmw 0.200 0.400 0.000
42 SKOS_MDO 0.200 0.400 0.000
33 OSMO 0.189 0.378 0.000
48 bmo 0.189 0.378 0.000
45 SSN 0.189 0.378 0.000
52 matinfo 0.167 0.333 0.000
39 QUDV 0.167 0.333 0.000
54 ontorule 0.155 0.311 0.000
57 ssos 0.155 0.311 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 58.0 0.238879 0.042721 0.155 0.2220 0.234 0.264 0.348
score_dash 58.0 0.465086 0.071189 0.311 0.4395 0.467 0.504 0.600
score_impact 58.0 0.012483 0.054014 0.000 0.0000 0.000 0.000 0.362

OBO dependency graph